Difference between revisions of "User:Lachesis"
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Currently the people involved are Larry, Daniel, Elizabeth, Tony, Lilyana and Mirela. | Currently the people involved are Larry, Daniel, Elizabeth, Tony, Lilyana and Mirela. | ||
| − | 2010. May 10 | + | 2010. May 10-13 |
| − | Lilyana's | + | Lilyana's task list: |
| − | - | + | - Repeated DESeq with different adjusted p-value cutoff (0.1, 0.05, 0.01, 0.001) - results in dropbox: RNA-Seq_update051010.pdf |
| − | - | + | - Repeated DEGseq (with RPKM normalization) with rRNA-filtered reads |
| + | - Uploaded GOseq paper (Young et al, Genome Biology 2010) in dropbox | ||
| + | - Trial run of GOseq with diapause-enriched data | ||
Revision as of 18:49, 13 May 2010
This is a wiki page created for communicating on the research progress of analysing high-throughout sequencing(HTS) data.
Currently the people involved are Larry, Daniel, Elizabeth, Tony, Lilyana and Mirela.
2010. May 10-13 Lilyana's task list:
- Repeated DESeq with different adjusted p-value cutoff (0.1, 0.05, 0.01, 0.001) - results in dropbox: RNA-Seq_update051010.pdf - Repeated DEGseq (with RPKM normalization) with rRNA-filtered reads - Uploaded GOseq paper (Young et al, Genome Biology 2010) in dropbox - Trial run of GOseq with diapause-enriched data
2010. Mar 10
We should start making a TODO list then assign them. Add more or edit this list:
* Data Collection
o Download Lilyana's data (done by E)
o Download mm9 genome build (done by E)
o Establish a list of ncRNAs (done by D)
o Establish a list of coding genes
* Software Setup
o Setup a local running version of Galaxy
* Analysis
o Run TopHat (and cufflinks?)
It might be better if we expand this list into sections instead?
