Difference between revisions of "User:Lachesis"
From PublicWiki
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Lilyana's to-do list: | Lilyana's to-do list: | ||
- Repeat DESeq with different adjusted p-value cutoff (0.1, 0.05, 0.01, 0.001) | - Repeat DESeq with different adjusted p-value cutoff (0.1, 0.05, 0.01, 0.001) | ||
| + | [[File:RNA-Seq_update051010.pdf]] | ||
- Repeat DEGseq (with RPKM normalization) with rRNA-filtered reads | - Repeat DEGseq (with RPKM normalization) with rRNA-filtered reads | ||
Revision as of 22:39, 10 May 2010
This is a wiki page created for communicating on the research progress of analysing high-throughout sequencing(HTS) data.
Currently the people involved are Larry, Daniel, Elizabeth, Tony, Lilyana and Mirela.
2010. May 10 Lilyana's to-do list:
- Repeat DESeq with different adjusted p-value cutoff (0.1, 0.05, 0.01, 0.001)
- Repeat DEGseq (with RPKM normalization) with rRNA-filtered reads
2010. Mar 10
We should start making a TODO list then assign them. Add more or edit this list:
* Data Collection
o Download Lilyana's data (done by E)
o Download mm9 genome build (done by E)
o Establish a list of ncRNAs (done by D)
o Establish a list of coding genes
* Software Setup
o Setup a local running version of Galaxy
* Analysis
o Run TopHat (and cufflinks?)
It might be better if we expand this list into sections instead?
