MassSpec research

This will hold the stuff for my mass spec research with Carl Ebeling as my advisor.

Papers from John Keane

he safest and quickest route to get started is probably to accelerate the "search" process (like the Toronto team did), based on the popular open-source algorithm in the "X!Tandem" program. Here are a few links to how it works:

X! Tandem flow chart

Open source system for analyzing, validating, and storing protein identification data. Related papers.

TANDEM: matching proteins with tandem mass spectra. Related papers.

Hardware-accelerated protein identification for mass spectrometry

Short analysis of the Toronto work on some blog

Other pages

A Method for Assessing the Statistical Significance of Mass Spectrometry-Based Protein Identifications Using General Scoring Schemes

Literature References for The GPM Project

Designing hardware for protein sequence analysis