Difference between revisions of "MassSpec research"
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==Other pages== | ==Other pages== | ||
| − | [http://www.thegpm.org/ The Global Proteome Machine Organization] | + | [http://www.thegpm.org/ The Global Proteome Machine Organization (Tons of open-source code to validate designs and such)] |
| − | [http://pubs.acs.org/cgi-bin/abstract.cgi/ancham/2003/75/i04/abs/ac0258709.html A Method for Assessing the Statistical Significance of Mass Spectrometry-Based Protein Identifications Using General Scoring Schemes] | + | [http://pubs.acs.org/cgi-bin/abstract.cgi/ancham/2003/75/i04/abs/ac0258709.html A Method for Assessing the Statistical Significance of Mass Spectrometry-Based Protein Identifications Using General Scoring Schemes (Sounds useful)] |
| − | [http://www.thegpm.org/GPM/references.html Literature References for The GPM Project] | + | [http://www.thegpm.org/GPM/references.html Literature References for The GPM Project (literary references are always good)] |
| − | [http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=14512343&query_hl=6&itool=pubmed_docsum Designing hardware for protein sequence analysis] | + | [http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=14512343&query_hl=6&itool=pubmed_docsum Designing hardware for protein sequence analysis (sounds related)] |
Revision as of 08:26, 1 February 2006
This will hold the stuff for my mass spec research with Carl Ebeling as my advisor.
Papers from John Keane
he safest and quickest route to get started is probably to accelerate the "search" process (like the Toronto team did), based on the popular open-source algorithm in the "X!Tandem" program. Here are a few links to how it works:
X! Tandem flow chart (Not yet useful)
Open source system for analyzing, validating, and storing protein identification data. (Useful soon I think) Related papers.
TANDEM: matching proteins with tandem mass spectra. (Not yet useful) Related papers.
Hardware-accelerated protein identification for mass spectrometry (Useful)
Short analysis of the Toronto work on some blog (Not useful yet)
Other pages
The Global Proteome Machine Organization (Tons of open-source code to validate designs and such)
Literature References for The GPM Project (literary references are always good)
Designing hardware for protein sequence analysis (sounds related)
