Difference between revisions of "MassSpec research"
From PublicWiki
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to how it works: | to how it works: | ||
| − | [http://www.proteome.ca/x-bang/tandem/docs/scoring-state-final.htm X! Tandem flow chart] | + | [http://www.proteome.ca/x-bang/tandem/docs/scoring-state-final.htm X! Tandem flow chart (Not yet useful)] |
| − | [http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15595733&query_hl=7&itool=pubmed_docsum Open source system for analyzing, validating, and storing protein identification data.] | + | [http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15595733&query_hl=7&itool=pubmed_docsum Open source system for analyzing, validating, and storing protein identification data. (Useful soon I think)] |
[http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?db=pubmed&cmd=Display&dopt=pubmed_pubmed&from_uid=15595733 Related papers.] | [http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?db=pubmed&cmd=Display&dopt=pubmed_pubmed&from_uid=15595733 Related papers.] | ||
| − | [http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=14976030&query_hl=7&itool=pubmed_docsum TANDEM: matching proteins with tandem mass spectra.] | + | [http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=14976030&query_hl=7&itool=pubmed_docsum TANDEM: matching proteins with tandem mass spectra. (Not yet useful)] |
[http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?db=pubmed&cmd=Display&dopt=pubmed_pubmed&from_uid=14976030 Related papers.] | [http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?db=pubmed&cmd=Display&dopt=pubmed_pubmed&from_uid=14976030 Related papers.] | ||
| − | [http://www.eecg.toronto.edu/~jayar/pubs/alex/RCM_HAPI_.pdf Hardware-accelerated protein identification for mass spectrometry] | + | [http://www.eecg.toronto.edu/~jayar/pubs/alex/RCM_HAPI_.pdf Hardware-accelerated protein identification for mass spectrometry (Useful)] |
| − | [http://falsepositives.blogspot.com/2005/03/mass-spectrometry-analysis-with-field.html Short analysis of the Toronto work on some blog] | + | [http://falsepositives.blogspot.com/2005/03/mass-spectrometry-analysis-with-field.html Short analysis of the Toronto work on some blog (Not useful yet)] |
Revision as of 08:25, 1 February 2006
This will hold the stuff for my mass spec research with Carl Ebeling as my advisor.
Papers from John Keane
he safest and quickest route to get started is probably to accelerate the "search" process (like the Toronto team did), based on the popular open-source algorithm in the "X!Tandem" program. Here are a few links to how it works:
X! Tandem flow chart (Not yet useful)
Open source system for analyzing, validating, and storing protein identification data. (Useful soon I think) Related papers.
TANDEM: matching proteins with tandem mass spectra. (Not yet useful) Related papers.
Hardware-accelerated protein identification for mass spectrometry (Useful)
Short analysis of the Toronto work on some blog (Not useful yet)
Other pages
The Global Proteome Machine Organization
