Difference between revisions of "MassSpec research"
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[http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=14976030&query_hl=7&itool=pubmed_docsum TANDEM: matching proteins with tandem mass spectra.] | [http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=14976030&query_hl=7&itool=pubmed_docsum TANDEM: matching proteins with tandem mass spectra.] | ||
[http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?db=pubmed&cmd=Display&dopt=pubmed_pubmed&from_uid=14976030 Related papers.] | [http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?db=pubmed&cmd=Display&dopt=pubmed_pubmed&from_uid=14976030 Related papers.] | ||
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[http://www.eecg.toronto.edu/~jayar/pubs/alex/RCM_HAPI_.pdf Hardware-accelerated protein identification for mass spectrometry] | [http://www.eecg.toronto.edu/~jayar/pubs/alex/RCM_HAPI_.pdf Hardware-accelerated protein identification for mass spectrometry] | ||
| − | [http://falsepositives.blogspot.com/2005/03/mass-spectrometry-analysis-with-field.html Short analysis of the Toronto work] | + | [http://falsepositives.blogspot.com/2005/03/mass-spectrometry-analysis-with-field.html Short analysis of the Toronto work on some blog] |
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Revision as of 06:49, 1 February 2006
This will hold the stuff for my mass spec research with Carl Ebeling as my advisor.
Papers from John Keane
he safest and quickest route to get started is probably to accelerate the "search" process (like the Toronto team did), based on the popular open-source algorithm in the "X!Tandem" program. Here are a few links to how it works:
Open source system for analyzing, validating, and storing protein identification data. Related papers.
TANDEM: matching proteins with tandem mass spectra. Related papers.
Hardware-accelerated protein identification for mass spectrometry
Short analysis of the Toronto work on some blog
