Difference between revisions of "MassSpec research"
Line 1: | Line 1: | ||
This will hold the stuff for my mass spec research with Carl Ebeling as my advisor. | This will hold the stuff for my mass spec research with Carl Ebeling as my advisor. | ||
+ | |||
+ | '''2/15/06''' | ||
+ | |||
+ | So now its downloading XTandem, figuring out what's going on there and waiting for some example data from John. Though I should have plenty to do in figuring out XTandem without the data . .. . | ||
+ | |||
+ | |||
Meeting with Carl and John 2:00 on Friday. Don't forget. | Meeting with Carl and John 2:00 on Friday. Don't forget. |
Latest revision as of 04:43, 16 February 2006
This will hold the stuff for my mass spec research with Carl Ebeling as my advisor.
2/15/06
So now its downloading XTandem, figuring out what's going on there and waiting for some example data from John. Though I should have plenty to do in figuring out XTandem without the data . .. .
Meeting with Carl and John 2:00 on Friday. Don't forget.
Papers from John Keane
he safest and quickest route to get started is probably to accelerate the "search" process (like the Toronto team did), based on the popular open-source algorithm in the "X!Tandem" program. Here are a few links to how it works:
X! Tandem flow chart (Not yet useful)
Open source system for analyzing, validating, and storing protein identification data. (Useful soon I think) Related papers.
TANDEM: matching proteins with tandem mass spectra. (Not yet useful) Related papers.
Hardware-accelerated protein identification for mass spectrometry (Useful)
Short analysis of the Toronto work on some blog (Not useful yet)
Other pages
The Global Proteome Machine Organization (Tons of open-source code to validate designs and such)
Literature References for The GPM Project (literary references are always good)
Designing hardware for protein sequence analysis (sounds related)