Difference between revisions of "User:Lachesis"
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This is a wiki page created for communicating on the research progress of analysing high-throughout sequencing(HTS) data. | This is a wiki page created for communicating on the research progress of analysing high-throughout sequencing(HTS) data. | ||
− | Currently the people involved are Larry, Daniel, and | + | Currently the people involved are Larry, Daniel, Elizabeth, Tony, Lilyana and Mirela. |
+ | |||
+ | 2010. May 10 | ||
+ | Lilyana's to-do list: | ||
+ | - Repeat DESeq with different adjusted p-value cutoff (0.1, 0.05, 0.01, 0.001) | ||
+ | - Repeat DEGseq (with RPKM normalization) with rRNA-filtered reads | ||
+ | |||
Revision as of 20:16, 10 May 2010
This is a wiki page created for communicating on the research progress of analysing high-throughout sequencing(HTS) data.
Currently the people involved are Larry, Daniel, Elizabeth, Tony, Lilyana and Mirela.
2010. May 10 Lilyana's to-do list:
- Repeat DESeq with different adjusted p-value cutoff (0.1, 0.05, 0.01, 0.001) - Repeat DEGseq (with RPKM normalization) with rRNA-filtered reads
2010. Mar 10
We should start making a TODO list then assign them. Add more or edit this list:
* Data Collection o Download Lilyana's data (done by E) o Download mm9 genome build (done by E) o Establish a list of ncRNAs (done by D) o Establish a list of coding genes * Software Setup o Setup a local running version of Galaxy * Analysis o Run TopHat (and cufflinks?)
It might be better if we expand this list into sections instead?